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Table 1 The clinical and microbial characteristics of 40 DFUs patients obtained by routine culture method and mNGS

From: Application of metagenomic next-generation sequencing (mNGS) to describe the microbial characteristics of diabetic foot ulcers at a tertiary medical center in South China

Patient ID

Sex

Age

Wagner’s grade

DFU subtypes

Detection results

Culture method

mNGS

1

Male

78

4

A-DFUs

Pvu

Fma, Pan, Pha, Pvu

2

Male

85

3

A-DFUs

None

Apr, Efa, Fma, HHV-4, Kpn, Pco, Pvu, Slu

3

Male

80

4

A-DFUs

Efa

Bfr, Efa, Sma

4

Female

53

4

A-DFUs

Efa

Ala, Efa, Sau, Sep

5

Male

75

4

A-DFUs

Pae

Pae

6

Male

74

3

A-DFUs

Pvu

Ate, Efa, Fma, HHV-4, Pla, Pst, Pvu

7

Female

71

4

A-DFUs

Tri

Cca, Cgl, Cpa, Ean, Efa, Hha, Ppu, Tas,

8

Male

63

4

A-DFUs

Pmi

Bfr, Fps, Mmo, Pin, Pmi, Sau, Sor, Tva

9

Male

63

3

A-DFUs

None

Fma, San, Pde

10

Male

75

4

A-DFUs

None

Sau

11

Male

77

4

A-DFUs

Eco

Ala, Eho, Kpn, Pco, Ror, Sag

12

Female

74

4

A-DFUs

Sag, Sau

Ate, Fma, Pha, Sau, Sag,

13

Male

51

4

M-DFUs

Fma

Ala, Fma, Pas, Pin, Pco, Sin, Vpa

14

Male

66

1

M-DFUs

None

None

15

Female

61

3

M-DFUs

Efa

Efa, Eho

16

Male

81

3

M-DFUs

Eco

Cst, Eco, Efa, Fma, Pbi, Pgr,

17

Male

65

3

M-DFUs

Kpn

Efa, Fma, Kae, Pan, Pbi, Pha, Sag

18

Male

80

3

M-DFUs

None

Mma, Sha

19

Male

59

4

M-DFUs

Sau

Pme, Sau, Fma, Pha, Ssi, Sin, Fmu, Cst, Efa

20

Male

71

3

M-DFUs

None

None

21

Male

66

5

M-DFUs

Kpn

Apr, Efa, Pan, Pbi, Pvu, Vpa

22

Female

76

4

M-DFUs

None

Mmo, Kox, Pvu, Sal, Sdy

23

Male

69

2

M-DFUs

None

Spy

24

Male

67

1

M-DFUs

None

Cal, Sep

25

Female

55

3

M-DFUs

None

Bhe, Pin, Pmi, Sex

26

Female

64

4

M-DFUs

None

Ala, Bth, Fma, Hku, Pco, Pbu, Spy

27

Male

79

4

M-DFUs

Sag

Apr, Mmo, Sag, Sau

28

Male

75

3

N-DFUs

None

Cpe, Ecl, HHV-4, Kpn, Kra, Kor, Lfe, Lpa, Sag

29

Male

38

2

N-DFUs

Sau

Cst, Sau, Sdy

30

Female

66

2

N-DFUs

Sha

Sau

31

Male

22

3

N-DFUs

Eav

Dpn, Pen, Pin, Pmi, Pst, Sco

32

Female

70

3

N-DFUs

None

Efa, Kpn, Mmo, Pae, Pmi

33

Male

78

1

N-DFUs

Sau

Sau

34

Male

29

1

N-DFUs

None

Efa

35

Female

56

3

N-DFUs

Pae

Bfr, Efa, Fma, Mmo, Pae, Pin, Spy

36

Male

51

2

N-DFUs

Sau

Cre, Dho, Efa, Fma, Hku, Pha, Sau, Sag

37

Male

59

3

N-DFUs

None

Aha, Fmu, Pas, Pco, Pti, Sdy

38

Male

47

3

N-DFUs

None

Era, Lri, Pan, Pde, Pmi, San,

39

Female

63

4

N-DFUs

Mmo, Efa

Efa, Mmo, Sma

40

Female

76

4

N-DFUs

Sag

Sag

  1. * N-DFUs: Peripheral Neuropathy-related DFUs; A-DFUs: Peripheral Artery disease-related DFUs; M-DFUs: Peripheral Neuropathy and Artery disease Mixed DFUs. Ala, Anaerococcus lactolyticus; Apr, Anaerococcus prevotii; Ate, Anaerococcus tetradius; Aha, Arcanobacterium haemolyticum; Bfr, Bacteroides fragilis; Bhe, Bacteroides heparinolyticus; Bth, Bacteroides thetaiotaomicron; Cal, Candida albicans; Cca, Candida carpophila; Cgl, Candida glabrata; Cpa, Candida parapsilosis; Cpe, Clostridium perfringens; Cre, Corynebacterium resistens; Cst, Corynebacterium striatum; Dho, Dermabacter hominis; Dpn, Dialister pneumosintes; Ean, Elizabethkingia anopheles; Ecl, Enterobacter cloacae; Eho, Enterobacter hormaechei; Eav, Enterococcus avium; Efa, Enterococcus faecalis; Era, Enterococcus raffinosus; Eco, Escherichia coli; Fma, Finegoldia magna; Fmu, Fusobacterium mucleatum; Fps, Fusobacterium pseudonecrophorum; Hha, Haematonectria haematococca; Hku, Helcococcus kunzii; HHV-4, Human herpesvirus 4; Kae, Klebsiella aerogenes; Kox, Klebsiella oxytoca; Kpn, Klebsiella pneumoniae; Kor, Kosakonia oryzae; Kra, Kosakonia radicincitans; Lfe, Lactobacillus fermentum; Lpa, Lactobacillus paracasei; Lri, Lancefieldella rimae; Mmo, Morganella morganii; Mma, Mycolicibacterium mageritense; Pmi, Parvimonas micra; Pco, Peptoniphilus coxii; Pgr, Peptoniphilus grossensis; Pha, Peptoniphilus harei; Pla, Peptoniphilus lacydonensis; Pan, Peptostreptococcus anaerobius; Pst, Peptostreptococcus stomatis; Pas, Porphyromonas asaccharolytica; Pen, Porphyromonas endodontalis; Pbi, Prevotella bivia; Pbu, Prevotella buccalis; Pde, Prevotella denticola; Pin, Prevotella intermedia; Pme, Prevotella melaninogenica; Pti, Prevotella timonensis; Pmi, Proteus mirabilis; Pvu, Proteus vulgaris; Pst, Providencia stuartii; Pae, Pseudomonas aeruginosa; Ppu, Pseudomonas putida; Ror, Raoultella ornithinolytica; Sma, Serratia marcescens; Sal, Shewanella algae; Sex, Slackia exigua; Sau, Staphylococcus aureus; Sep, Staphylococcus epidermidis; Sha, Staphylococcus haemolyticus; Slu, Staphylococcus lugdunensis; Ssi, Staphylococcus simulans; Sag, Streptococcus agalactiae; San, Streptococcus anginosus; Sco, Streptococcus constellatus; Sdy, Streptococcus dysgalactiae; Sin, Streptococcus intermedius; Sor, Streptococcus oralis; Spy, Streptococcus pyogenes; Tva, Trichomonas vaginalis; Tas, Trichosporon asahii; Tri, Trichosporon sp. Vpa, Veillonella parvula